Osamu Miyashita Date of Birth: January 7, 1974 University of California at San Diego, Department of Physics, 9500 Gilman Drive, La Jolla, CA 92093, USA +1-858-534-7337 omiyashita at ucsd dot edu

RESEARCH INTERESTS

EDUCATIONS

POSTDOCTORAL TRAINING

PROFESSIONAL EXPERIENCES

HONOR, AWARDS

PUBLICATIONS

Doctoral Thesis

Osamu Miyashita (2000). Role Of Conformational Dynamics On Electron And Energy Transfer In A Protein Molecule. PhD thesis, Kyoto University, Kyoto, Japan

Research Papers

1. Miyashita, O; Okamura, MY; Onuchic, JN. 2005. Interprotein electron transfer from cytochrome c(2) to photosynthetic reaction center: Tunneling across an aqueous interface. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (10): 3558-3563.
2. Wong, L; Lieser, SA; Miyashita, O; Miller, M; Tasken, K; Onuchic, JN; Adams, JA; Woods, VL; Jennings, PA. 2005. Coupled motions in the SH2 and kinase domains of Csk control Src phosphorylation. JOURNAL OF MOLECULAR BIOLOGY 351 (1): 131-143.
3. Miyashita, O; Wolynes, PG; Onuchic, JN. 2005. Simple energy landscape model for the kinetics of functional transitions in proteins. JOURNAL OF PHYSICAL CHEMISTRY B 109 (5): 1959-1969.
4. Miyashita, O; Onuchic, JN; Okamura, MY. 2004. Transition state and encounter complex for fast association of cytochrome c(2) with bacterial reaction center. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (46): 16174-16179.
5. Tama, F; Miyashita, O; Brooks, CL. 2004. Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM. JOURNAL OF STRUCTURAL BIOLOGY 147 (3): 315-326.
6. Wong, L; Lieser, S; Chie-Leon, B; Miyashita, O; Aubol, B; Shaffer, J; Onuchic, JN; Jennings, PA; Woods, VL; Adams, JA. 2004. Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk. JOURNAL OF MOLECULAR BIOLOGY 341 (1): 93-106.
7. Tama, F; Miyashita, O; Brooks, CL. 2004. Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis. JOURNAL OF MOLECULAR BIOLOGY 337 (4): 985-999.
8. Miyashita, O; Onuchic, JN; Wolynes, PG. 2003. Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100 (22): 12570-12575.
9. Miyashita, O; Onuchic, JN; Okamura, MY. 2003. Continuum electrostatic model for the binding of cytochrome c(2) to the photosynthetic reaction center from Rhodobacter sphaeroides. BIOCHEMISTRY 42 (40): 11651-11660.
10. Moritsugu, K; Miyashita, O; Kidera, A. 2003. Temperature dependence of vibrational energy transfer in a protein molecule. JOURNAL OF PHYSICAL CHEMISTRY B 107 (14): 3309-3317.
11. Miyashita, O; Okamura, MY; Onuchic, JN. 2003. Theoretical understanding of the interprotein electron transfer between cytochrome c(2) and the photosynthetic reaction center. JOURNAL OF PHYSICAL CHEMISTRY B 107 (5): 1230-1241.
12. Miyashita, O; Axelrod, HL; Onuchic, JN. 2002. Different scenarios for inter-protein electron tunneling: The effect of water-mediated pathways. JOURNAL OF BIOLOGICAL PHYSICS 28 (3): 383-394.
13. Tama, F; Miyashita, O; Kitao, A; Go, N. 2000. Molecular dynamics simulation shows large volume fluctuations of proteins. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 29 (7): 472-480.
14. Moritsugu, K; Miyashita, O; Kidera, A. 2000. Vibrational energy transfer in a protein molecule. PHYSICAL REVIEW LETTERS 85 (18): 3970-3973.
15. Miyashita, O; Go, N. 2000. Reorganization energy of protein electron transfer reaction: Study with structural and frequency signature. JOURNAL OF PHYSICAL CHEMISTRY B 104 (31): 7516-7521.
16. Miyashita, O; Go, N. 1999. Pressure dependence of protein electron transfer reactions: Theory and simulation. JOURNAL OF PHYSICAL CHEMISTRY B 103 (3): 562-571.